PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L01331.1.p
Common NameEUGRSUZ_L01331, LOC104429445
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 531aa    MW: 59378.2 Da    PI: 6.7441
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L01331.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-361862772102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye+++++ ++ ++sw  +++sfvv+d+++f+k+vLp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F+kgkk+ll
  Eucgr.L01331.1.p 186 FLRKTYEMVSNPGTDPVVSWGLSQDSFVVWDQQQFSKEVLPRYFKHSNFSSFIRQLNTYGFRKINPDR---------WEFANQVFQKGKKHLL 269
                       9********************888*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++ikr+++
  Eucgr.L01331.1.p 270 KNIKRRRN 277
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.2E-55182275IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-38182275IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-34182275IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.8E-32186275IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-16186209IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-16224236IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340225249IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-16237249IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MTAFHGGSCG CSPGRANGSC PWFSETFFRD SSLELEKAKT FARSWEEIPS FAVLDGGDHG  60
EIGSRSPLYP ELSPNDSSRS QSKARESELG CCGLLSHSGP LPQVAIGDGK IEAGPPLHSC  120
LTRPELCSAL AMQAVKIKEE LEKEKVATTA DPRDAAILSP SCSWPAAEYD MAKPMEDLGV  180
VGPTPFLRKT YEMVSNPGTD PVVSWGLSQD SFVVWDQQQF SKEVLPRYFK HSNFSSFIRQ  240
LNTYGFRKIN PDRWEFANQV FQKGKKHLLK NIKRRRNLNK HRKKSSSTVT SDYQKAEKEA  300
ELKMLKKDQE ALKTKILKLR EEQDNLQHEI KQVAEGVRHA DCRNQHLFLF LIKAVKSPNF  360
ILNLTLKKKQ KRDLETCESS KKRELLGPDA EATKCLLEAM DHMIQSPKVD CLKISDDLAQ  420
MERRPNSVVP EHFGTFQMHN PRPSMDGEDF RVAQGQTPNQ MTGASSSDLS SVFQGISEKL  480
LKEDVVIGAD ADNIEVEDHL TLNDTGIYLE LESLIDGTGT QVNSWSKRED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-2517927519129Heat shock factor protein 1
5d5v_B9e-2517927519129Heat shock factor protein 1
5d5v_D9e-2517927519129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268274LKNIKRR
2365371LKKKQKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L01331.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049485.10.0PREDICTED: heat stress transcription factor A-2
TrEMBLA0A058ZUM70.0A0A058ZUM7_EUCGR; Uncharacterized protein
STRINGXP_010040599.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-48heat shock transcription factor A2