PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L01473.1.p
Common NameEUGRSUZ_L01473, LOC104429618
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 214aa    MW: 23515.2 Da    PI: 4.613
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L01473.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.3e-1942141198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd++k grlvlp+k+ae++   ++++e+  l+++d +g +W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e
  Eucgr.L01473.1.p  42 FEKMLSASDAGKIGRLVLPRKCAEAYfpPISQPEGLPLKVQDAKGSEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PE 132
                       89**************************555566778***************9989999999***9.********************766.77 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++lv+++++
  Eucgr.L01473.1.p 133 GKLVMGFRK 141
                       777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-3138148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-2039141IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-2240141No hitNo description
PROSITE profilePS5086310.99742143IPR003340B3 DNA binding domain
SMARTSM010193.9E-2042143IPR003340B3 DNA binding domain
PfamPF023622.7E-1642141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAAPRGDARG RNQLLPRYWP RITDQELQQI SGDSNSVITP LFEKMLSASD AGKIGRLVLP  60
RKCAEAYFPP ISQPEGLPLK VQDAKGSEWI FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA  120
GDIVTFSRLE PEGKLVMGFR KASTAPSSDQ EKHSQAPEKK GHDGEDASIS EQRPEQQLEE  180
SSEQSDAHLQ GNMGKGGAEA EAGEEDVEEA NTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-70201451126B3 domain-containing transcription repressor VAL1
5yzz_C4e-70201451126B3 domain-containing transcription repressor VAL1
5z00_C4e-70201451126B3 domain-containing transcription repressor VAL1
5z00_G4e-70201451126B3 domain-containing transcription repressor VAL1
5z00_K4e-70201451126B3 domain-containing transcription repressor VAL1
5z00_M4e-70201451126B3 domain-containing transcription repressor VAL1
6j9a_A4e-70201452127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L01473.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010040774.11e-157PREDICTED: B3 domain-containing protein Os07g0563300 isoform X8
SwissprotQ0D5G42e-84Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A058ZT261e-156A0A058ZT26_EUCGR; Uncharacterized protein
STRINGXP_010040771.11e-127(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.15e-81HSI2-like 1