PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L01801.1.p
Common NameEUGRSUZ_L01801
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 143aa    MW: 16347.9 Da    PI: 9.0786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L01801.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.9e-1131127285
                       EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 
                       +k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d +   +  + + ++ +sg+yvl++GW keF+k  gL +gD + 
  Eucgr.L01801.1.p  31 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmseetvrQVESGKGADVIVRDVDTcSENGLVFVFWASSGSYVLKGGWiKEFAKRRGLAVGDEIG 123
                       5889************************99888887555558889999998885333444455*************899***********888 PP

                       EEE- CS
                B3  82 Fkld 85 
                       ++ d
  Eucgr.L01801.1.p 124 LYWD 127
                       8844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-1429135IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.005330141IPR003340B3 DNA binding domain
CDDcd100172.05E-1530138No hitNo description
Gene3DG3DSA:2.40.330.103.0E-1431137IPR015300DNA-binding pseudobarrel domain
PfamPF023624.2E-832127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKGSEVLLLQ DWWWLVISTE LTLLFDPYKI KKRLTQSDLG HLSRLLIGRD FVKSHFLRWM  60
SEETVRQVES GKGADVIVRD VDTCSENGLV FVFWASSGSY VLKGGWIKEF AKRRGLAVGD  120
EIGLYWDPIT SKFHFSLLHK AN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L01801.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041071.21e-79PREDICTED: uncharacterized protein LOC104429979
RefseqXP_010058716.11e-79PREDICTED: uncharacterized protein LOC104446575
RefseqXP_018729963.14e-80PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A058ZUD84e-98A0A058ZUD8_EUCGR; Uncharacterized protein
STRINGXP_010041071.14e-79(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.17e-28B3 family protein