PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L01802.1.p
Common NameEUGRSUZ_L01802
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 148aa    MW: 16926.4 Da    PI: 9.8975
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L01802.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-1236142296
                       EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 
                       +k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d +   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v 
  Eucgr.L01802.1.p  36 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmneetvrQVESSKGADVIVRDMDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAVGDEVG 128
                       5889************************98888877444457788999996666778888888*************999***********999 PP

                       EEE-SS.SEE..EEEE CS
                B3  82 Fkldgr.sefelvvkv 96 
                       ++   + s  ++++++
  Eucgr.L01802.1.p 129 IYW--EpSASKFHFSL 142
                       995..44555457666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-1634143IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-1735143No hitNo description
SMARTSM010190.006135146IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-1636143IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-937141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAKYKRTQRG KKEASGCDPE EVSTELTLLF DPYKIKKRLT QSDLGHLSRL LIGRDFVKSH  60
FLRWMNEETV RQVESSKGAD VIVRDMDTCS EHRLVFVFWA SSGSYVLKGG WIKEFVKRRG  120
LAVGDEVGIY WEPSASKFHF SLLHKAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L01802.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041071.21e-105PREDICTED: uncharacterized protein LOC104429979
TrEMBLA0A058ZTH91e-104A0A058ZTH9_EUCGR; Uncharacterized protein
STRINGXP_010041071.11e-105(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.11e-30B3 family protein