PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L01867.1.p
Common NameEUGRSUZ_L01867
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 152aa    MW: 17866.5 Da    PI: 9.8516
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L01867.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.82.6e-3771371128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                       lp+G rFhPt ee v++yLk++++g   +   +i++vdi+k++P++Lp k       + + + +ew+fFs++       ++ +r+t sgyWk+
  Eucgr.L01867.1.p   7 LPVGHRFHPTGEEFVNYYLKRRIQGIVDHP-CIIPDVDICKWDPRELPdKfhgesiiHRDDQVREWWFFSPHTP-----QQVKRSTPSGYWKK 93 
                       799*********************998555.58***************5467766432233666*******966.....4789********** PP

               NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       tg d++v+++ +g+ +g+kk Lvf+ g+ +kg+kt+Wv hey+l
  Eucgr.L01867.1.p  94 TGIDRKVKARdNGRIIGTKKFLVFHIGQGKKGVKTNWVFHEYHL 137
                       ********9988899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-403144IPR003441NAC domain
PROSITE profilePS5100538.4117151IPR003441NAC domain
PfamPF023652.6E-228137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MINLQHLPVG HRFHPTGEEF VNYYLKRRIQ GIVDHPCIIP DVDICKWDPR ELPDKFHGES  60
IIHRDDQVRE WWFFSPHTPQ QVKRSTPSGY WKKTGIDRKV KARDNGRIIG TKKFLVFHIG  120
QGKKGVKTNW VFHEYHLPTD DVLNLTLLYS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-27613714140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L01867.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018722506.11e-103PREDICTED: NAC domain-containing protein 62
TrEMBLA0A058ZU931e-108A0A058ZU93_EUCGR; Uncharacterized protein
STRINGXP_010041129.11e-103(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2067726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.11e-36NAC domain containing protein 62