PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L01924.2.p
Common NameEUGRSUZ_L01924
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 213aa    MW: 23852.4 Da    PI: 8.8717
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L01924.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.34.4e-3451382128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrk.nratksgyWkatg 87 
                       p+G+rF+Pt++el++++L+ k++gk       i+e+ iy++eP dL         + ++ +e++fF++   k ++++r+ nr+t+ gyWk t 
  Eucgr.L01924.2.p   5 PVGLRFEPTEDELIDHHLRGKLKGKLEAY-CLIPELYIYSCEPPDLFIsynelsDIPSDGRECFFFCPCGDKIPSNHRSnNRMTELGYWKDTC 96 
                       89*********************998555.67**************633455555666899***********9987776156*********** PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++ + s  +g+++g++k+Lv+y+gr+pkg+ktd vmhey l
  Eucgr.L01924.2.p  97 KKRVIRSLvTGKQIGIRKILVYYEGRQPKGRKTDVVMHEYLL 138
                       *99998878999****************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-342159IPR003441NAC domain
PROSITE profilePS5100534.1624161IPR003441NAC domain
PfamPF023658.9E-195137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MASWPVGLRF EPTEDELIDH HLRGKLKGKL EAYCLIPELY IYSCEPPDLF ISYNELSDIP  60
SDGRECFFFC PCGDKIPSNH RSNNRMTELG YWKDTCKKRV IRSLVTGKQI GIRKILVYYE  120
GRQPKGRKTD VVMHEYLLNS SVSDSKISGP IAFVLCHIID RKRKKVRSAK ASTLANSSAG  180
SIPNDSGNGQ AHEISAQVPK NCSGLTYSSM IY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-21516216169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L01924.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018722529.11e-145PREDICTED: protein NTM1-like 9
TrEMBLA0A058ZS051e-156A0A058ZS05_EUCGR; Uncharacterized protein
STRINGXP_010065768.11e-142(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.17e-36NAC 014