PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L02104.1.p
Common NameEUGRSUZ_L02104
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 162aa    MW: 18321 Da    PI: 8.7024
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L02104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32e-1151156396
                       EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDfvvF 82 
                       k lt+sd + ++rl + ++ +++h           + ++ ++ +++++d  +g + ++ + ++ +sg+y l++GW keFvk   L++gD v +
  Eucgr.L02104.1.p  51 KRLTQSDLGHLSRLLIGRDLVKSHflrwmdeetvrQVESGKGADVIVRDmDTGSEHRLVFVFWASSGSYALKGGWiKEFVKRRALEVGDEVGI 143
                       889*************************9988887555568999*****8899999999999*************999*************** PP

                       EE-SS.SEE..EEEE CS
                B3  83 kldgr.sefelvvkv 96 
                       +  ++ se+++++++
  Eucgr.L02104.1.p 144 Y--WDpSERKFHFSL 156
                       9..666777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-1549155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1549155IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-1750157No hitNo description
PfamPF023621.6E-851155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MASLTNAESL IAEKKAKCKR TQKGKKEASG CDAEEVSTEL TLVFDPYKVK KRLTQSDLGH  60
LSRLLIGRDL VKSHFLRWMD EETVRQVESG KGADVIVRDM DTGSEHRLVF VFWASSGSYA  120
LKGGWIKEFV KRRALEVGDE VGIYWDPSER KFHFSLLHMV D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L02104.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058716.11e-100PREDICTED: uncharacterized protein LOC104446575
RefseqXP_010058722.21e-100PREDICTED: B3 domain-containing protein At2g33720
TrEMBLA0A058ZRJ61e-114A0A058ZRJ6_EUCGR; Uncharacterized protein
STRINGXP_010041366.11e-114(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.14e-29B3 family protein