PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L02150.1.p
Common NameEUGRSUZ_L02150, LOC104430368
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 173aa    MW: 18766.8 Da    PI: 9.4766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L02150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.001192114123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp+Cg  F+    L  H+r+H
  Eucgr.L02150.1.p  92 HECPICGLDFPIGQALGGHMRRH 114
                       79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-841114No hitNo description
PfamPF139123.4E-114367IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0974370IPR007087Zinc finger, C2H2
SMARTSM003550.474365IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139127.8E-1091116IPR007087Zinc finger, C2H2
SMARTSM003550.3392114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVKRDREDME VEALAVANSL MLLSRVGQST DSNCKWQPTE RMFACKTCNR EFSSFQALGG  60
HRASHKKPKL ISGDLLRLGH EADSSPAKPK THECPICGLD FPIGQALGGH MRRHRAAMLE  120
SLAAAATKPV PVLKKSNSKR VTGLDLNSSP MEDDLTLRLG KVAPPLVLDL VL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L02150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4801930.0KC480193.1 Eucalyptus grandis C2H2-type zinc finger protein 5 (ZFP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041405.11e-124PREDICTED: zinc finger protein ZAT12
TrEMBLA0A058ZSH61e-123A0A058ZSH6_EUCGR; Uncharacterized protein
STRINGXP_010041405.11e-123(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-37C2H2 family protein