PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L02178.1.p
Common NameEUGRSUZ_L02178, LOC104430389
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 208aa    MW: 23710.2 Da    PI: 10.1534
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L02178.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.2e-1288177183
                       EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                       f+k+ + sd   + +rl l k+ ++e+       + ++e+++++t +++ g+++ ++++++ ++  yvl ++WkeF+++n+Lke D++ + 
  Eucgr.L02178.1.p  88 FEKQVKASDLKDQqNRLLLRKEDVREFilplleeDDNPEQGVEVTTYNTLGETFPMQFKMWSGK-VYVLMRNWKEFARENKLKESDTLNIW 177
                       889999999877679*******************99999*******************777765.6999*****************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023624.5E-988191IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-1788194IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00288195IPR003340B3 DNA binding domain
CDDcd100173.46E-1188174No hitNo description
SuperFamilySSF1019363.53E-1688196IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.64289195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MESQTNMFSG DSAVREEAHE VLQASLFLSV LKHTGEGVSR GDKPARSKDV QVSSSSCGPL  60
RKPRRSNPPI VRRVNALIDS IGRCRGPFEK QVKASDLKDQ QNRLLLRKED VREFILPLLE  120
EDDNPEQGVE VTTYNTLGET FPMQFKMWSG KVYVLMRNWK EFARENKLKE SDTLNIWAFR  180
NVQMKRLCFV ISRTPKAPGQ IRMEKGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L02178.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041424.11e-153PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A058ZRC71e-152A0A058ZRC7_EUCGR; Uncharacterized protein
STRINGXP_010041424.11e-152(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.16e-23B3 family protein