PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L02216.1.p
Common NameEUGRSUZ_L02216
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 224aa    MW: 25696.7 Da    PI: 10.0682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L02216.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.5e-2115105299
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       fk+   sd+l++grl +pkkf++++g++   s  + l+ +sg+ Wev+l   ++ ++++l++GW +Fvk   +k g f+vF+++g s f  +v
  Eucgr.L02216.1.p  15 FKII-LSDALQNGRLGIPKKFVRKYGSN--LSDLVFLQVPSGQAWEVEL--VRRTDGVWLRRGWPDFVKHYAIKHGHFLVFRYEGGSAF--RV 100
                       4444.59******************988..888999999**********..99999****************************99999..99 PP

                       EEE-S CS
                B3  95 kvfrk 99 
                        +f+k
  Eucgr.L02216.1.p 101 VIFDK 105
                       99987 PP
2B338.71.8e-121632194498
                       -EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  44 rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       r W  ++++   +++ ++ + +GWk Fv++n+Lk+gD+++F+l +++   l+v++fr
  Eucgr.L02216.1.p 163 RFWLARYKFgiYGRKTQVKINSGWKLFVQDNNLKVGDICIFELLDSDLIVLKVSIFR 219
                       678888877667888889************************987677777888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-287106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-277106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-2112104No hitNo description
PROSITE profilePS5086314.76213106IPR003340B3 DNA binding domain
SMARTSM010197.1E-1914106IPR003340B3 DNA binding domain
PfamPF023621.0E-1815105IPR003340B3 DNA binding domain
SMARTSM010190.0023133221IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-13142221IPR015300DNA-binding pseudobarrel domain
PfamPF023624.4E-10163219IPR003340B3 DNA binding domain
CDDcd100173.64E-10163219No hitNo description
PROSITE profilePS5086311.011165221IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-11169219IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVGGRHFESQ TPHFFKIILS DALQNGRLGI PKKFVRKYGS NLSDLVFLQV PSGQAWEVEL  60
VRRTDGVWLR RGWPDFVKHY AIKHGHFLVF RYEGGSAFRV VIFDKSASEI KYPIITELPK  120
REENEGDTGG EKSEALKRAA SFQSSNPFFL TLMQPSLICH SLRFWLARYK FGIYGRKTQV  180
KINSGWKLFV QDNNLKVGDI CIFELLDSDL IVLKVSIFRY SID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L02216.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041490.18e-94PREDICTED: B3 domain-containing protein At3g18960
TrEMBLA0A058ZRB61e-163A0A058ZRB6_EUCGR; Uncharacterized protein
STRINGXP_010041490.13e-93(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.19e-27B3 family protein