PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.L02411.1.p

Common Name

EUGRSUZ_L02411, LOC104430637

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 164aa MW: 18494.7 Da PI: 4.791

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.L02411.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.4	1.6e-12	20	96	2	80
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W+ l L++ +e + ++ + ++We +++++ + r+++qC+ kwe+l +y+++k++e++ s++ s ++ Eucgr.L02411.1.p 20 WSAGNLLILVNEIAAVEGDCLNALSSYQKWEIIAENCTVLDVDRTSNQCRRKWESLLAEYRRVKQHESR--SGVNSYWS 96 777777888888888888888889999****************************************98..56666775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-10	20	95	No hit	No description
PROSITE profile	PS50090	6.748	20	76	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.6E-4	47	76	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MKQEMGSGPR RTRSQAAPDW SAGNLLILVN EIAAVEGDCL NALSSYQKWE IIAENCTVLD 60 VDRTSNQCRR KWESLLAEYR RVKQHESRSG VNSYWSLGRD RKKVLGLPET FDRELFEAIN 120 NLLMAREDRA DTEPDSDPEA EGDTLEAAVC KSGNFCFGFL RNF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.L02411.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010041686.1	1e-119	PREDICTED: trihelix transcription factor ASR3
TrEMBL	A0A058ZRW2	1e-117	A0A058ZRW2_EUCGR; Uncharacterized protein
STRING	XP_010041686.1	1e-118	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12154	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	9e-55	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Eucgr.L02411.1.p
Entrez Gene	104430637