PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L02867.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 126aa    MW: 14374.5 Da    PI: 9.1026
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L02867.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.14.1e-2051091112
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lp G+rF P+de+ +++ L++kv+g+ +   e+i+e+d+y+ ePw++    k+ e+++y F+k + k+   +r +r++ sgyW+   +  +v+
  Eucgr.L02867.1.p   5 LPIGYRFCPSDEQAISYCLAPKVKGEVVFP-EFIHEFDVYEKEPWKFFD--KNAEESLYVFTKLKMKK---SRVERTAGSGYWRGAQS-SDVK 90 
                       699**********************99555.79**************62..3456789****998875...69***********7654.6777 PP

               NAM  94 skkgelvglkktLvfykgr 112
                       + +++++glkk L f  ++
  Eucgr.L02867.1.p  91 DCHNNVIGLKKHLNFKVKD 109
                       77899**********8433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-224113IPR003441NAC domain
PROSITE profilePS5100523.0715125IPR003441NAC domain
PfamPF023655.7E-136108IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MADTLPIGYR FCPSDEQAIS YCLAPKVKGE VVFPEFIHEF DVYEKEPWKF FDKNAEESLY  60
VFTKLKMKKS RVERTAGSGY WRGAQSSDVK DCHNNVIGLK KHLNFKVKDG SSSIAKTPRR  120
ILDYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L02867.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042159.13e-90PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A059BX482e-79A0A059BX48_EUCGR; Uncharacterized protein
STRINGXP_010042159.11e-89(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.13e-13NAC domain containing protein 3