PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.L03237.1.p

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 146aa MW: 16798.1 Da PI: 7.8086

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.L03237.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.2	1.8e-20	40	123	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +YA GF vr+++ ++ r+geit+rtfvC++ g++ +++++ +++ +r+e r+gC a++k k + +g +ev++ ++ HnH++ Eucgr.L03237.1.p 40 YVAYAIGKGFGVRNDNLLRN-RKGEITRRTFVCNCAGHPINSSDQ--EKKYHRSEVRCGCPARIKFKVD-NGIYEVIEYVSTHNHPFI 123 99*************999.7788**********999877..89999************9.*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.5E-18	40	124	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MAESEYETSH LAHVMRDMEK DYEFAIGMVF SNELEAYHTY VAYAIGKGFG VRNDNLLRNR 60 KGEITRRTFV CNCAGHPINS SDQEKKYHRS EVRCGCPARI KFKVDNGIYE VIEYVSTHNH 120 PFIPEGQKHM IRCGRMMSDT CKCYS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.L03237.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056981.1	1e-95	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059ANC4	2e-70	A0A059ANC4_EUCGR; Uncharacterized protein
TrEMBL	A0A059CXY9	3e-67	A0A059CXY9_EUCGR; Uncharacterized protein
STRING	XP_010056981.1	4e-95	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14997	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-12	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.L03237.1.p