PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L03347.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 148aa    MW: 17250.3 Da    PI: 6.6279
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L03347.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.25.4e-2691362128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeek.....ewyfFskrdkkyatgkrknratksg 81 
                       p+G+ F+Pt+e+lv ++Lkkk+eg+  +   +i e+diy++eP++L k        +     +     e++fF+ +        r++r+t  g
  Eucgr.L03347.1.p   9 PVGYVFKPTEEQLVGHFLKKKLEGEMEDH-PAIVEADIYSFEPSHLFKlyhlmsepE-----EpsyegECFFFCAN--------RRERKTPLG 87 
                       89**********************99776.78**************64455443331.....12333488999987........4578999** PP

               NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       yWk+t ++ ++ ++   +e +g k+++v+++gr+p+ ++td v hey+ 
  Eucgr.L03347.1.p  88 YWKETCQKSDIRASsdPNEIIGFKRIFVYHEGRQPRRRRTDVVNHEYHY 136
                       ***********998666778***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-286141IPR003441NAC domain
PROSITE profilePS5100528.1138147IPR003441NAC domain
PfamPF023656.3E-179135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAGSTEGRPV GYVFKPTEEQ LVGHFLKKKL EGEMEDHPAI VEADIYSFEP SHLFKLYHLM  60
SEPEEPSYEG ECFFFCANRR ERKTPLGYWK ETCQKSDIRA SSDPNEIIGF KRIFVYHEGR  120
QPRRRRTDVV NHEYHYQNSD GSSLSRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-13913416138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L03347.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018723101.11e-103PREDICTED: NAC domain-containing protein 40-like
TrEMBLA0A059BCQ72e-43A0A059BCQ7_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010040116.12e-98(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-23NTM1-like 8