PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L03490.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 497aa    MW: 54722.6 Da    PI: 6.0282
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L03490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.84.2e-1071094881373
              GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar....svselykalppsetseknsseelaalklfse 86 
                       lv+lL+++Aea++  ++   la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +    ++++l +  p +++++++++++laa++l ++
  Eucgr.L03490.1.p 109 LVHLLMAAAEALTGVNKCheLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGagggHGKHLISGGPQRDDHHHHQTDVLAAFQLMQD 201
                       68***********9665444************9987769*****************983223456677777888888888************* PP

              GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvp 175
                       +sP++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++  +g  s  +++e+g+rL+ fA+++g p
  Eucgr.L03490.1.p 202 MSPYVKFGHFTANQAILEAVTQHRRVHIVDYDIMEGIQWASLMQALVSRKNGPPapHLRITALSRGGNGrrSIGTIQEMGRRLTAFATSIGQP 294
                       **************************************************887666*********888898999******************* PP

              GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysal 267
                       f+f+    ++ +++++++L++ +gEal+ n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+   +++ F+ rf+++l++ysal
  Eucgr.L03490.1.p 295 FSFHQCRLDSDKTFRPSSLKLVRGEALIFNCMLHLPHFSYRAPES---VASFLSGAKTLNPRLVTLVEEELGPiGDQGFVSRFIDSLHHYSAL 384
                       *****99999***************************98555444...459*******************8888******************* PP

              GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslv 359
                       +dslea++p + ++r+ vEr++lg++iv  +    +      e+ ++Wrerl++ GF+pv +s  + +qaklll  ++ dgyrvee  s+ lv
  Eucgr.L03490.1.p 385 YDSLEAGFPMQRRARALVERVFLGPRIVGSLGRIYRT--RGDEEGGSWRERLGATGFRPVDISFANHCQAKLLLGLFN-DGYRVEELaSNRLV 474
                       ******************************9999887..456678*********************************.******8769999* PP

              GRAS 360 lgWkdrpLvsvSaW 373
                       lgWk+r+L+s+S W
  Eucgr.L03490.1.p 475 LGWKSRRLLSASIW 488
                       ************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.86683469IPR005202Transcription factor GRAS
PfamPF035141.4E-104109488IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAMAIDDAAE LDFSAYSTST TTTTSATTTT TDDEYGCNWN DWSPVVDWNT LSGGQDDFQD  60
LIESMIDESG LQPALSAVNY QEGCNSPSTD TTMFTDEEPS GDDLKGLRLV HLLMAAAEAL  120
TGVNKCHELA RVILVRLKEL VSPTDGTNME RLAAYFTEAL QGLLEGAGGG HGKHLISGGP  180
QRDDHHHHQT DVLAAFQLMQ DMSPYVKFGH FTANQAILEA VTQHRRVHIV DYDIMEGIQW  240
ASLMQALVSR KNGPPAPHLR ITALSRGGNG RRSIGTIQEM GRRLTAFATS IGQPFSFHQC  300
RLDSDKTFRP SSLKLVRGEA LIFNCMLHLP HFSYRAPESV ASFLSGAKTL NPRLVTLVEE  360
ELGPIGDQGF VSRFIDSLHH YSALYDSLEA GFPMQRRARA LVERVFLGPR IVGSLGRIYR  420
TRGDEEGGSW RERLGATGFR PVDISFANHC QAKLLLGLFN DGYRVEELAS NRLVLGWKSR  480
RLLSASIWSS PFDSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-5811748927379Protein SCARECROW
5b3h_A3e-5811748926378Protein SCARECROW
5b3h_D3e-5811748926378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L03490.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042750.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A061FHT30.0A0A061FHT3_THECC; GRAS family transcription factor
STRINGXP_010042750.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-174GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]