PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L03599.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 166aa    MW: 18863.1 Da    PI: 9.0908
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L03599.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-0827482446
                      HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                      W+ Ia++++ gRt+++++++w++
  Eucgr.L03599.1.p 27 WSVIASKLP-GRTDNDVQNHWNT 48
                      *********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-61955IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-102357IPR009057Homeodomain-like
PfamPF002498.5E-62748IPR001005SANT/Myb domain
CDDcd001674.89E-62748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEVSLRMGMT SYALFFNHRK QASVKMWSVI ASKLPGRTDN DVQNHWNTKP KKSLLKQMAS  60
LKTLPESNFS HQDWARNLAS IDPATKNQQY ADISIEVSSH SHSSSVAMKS CYSGSANGSS  120
EQDQVLLDFD YDSMLNDFGF QDQSIYAQFM FHKCHRHRSS HQHKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L03599.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049592.11e-45PREDICTED: transcription factor MYB36
TrEMBLA0A059CV823e-44A0A059CV82_EUCGR; Uncharacterized protein
STRINGXP_010049592.14e-45(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.13e-10myb domain protein 87