PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L03668.1.p
Common NameEUGRSUZ_L01042
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 133aa    MW: 14940.1 Da    PI: 9.803
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L03668.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000491106116
                       EEETTTTEEESSHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnL 16 
                       +kC++C+ks+s+k n+
  Eucgr.L03668.1.p  91 FKCKNCNKSYSSKNNF 106
                       89**********9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MASSSMHQLS FARHPLLPRN SRVQPRPQFS SVRLPSFTVR ASSVLAVEPD TGTQKDQTLE  60
VEIFSCPICY EPLIRRGPSG LNLEAVYRSG FKCKNCNKSY SSKNNFLDLT LTAGLRDYVE  120
VKPARSELFR YH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L03668.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018722061.11e-90PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic isoform X2
SwissprotQ0WPT72e-33Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBLA0A058ZU099e-93A0A058ZU09_EUCGR; Uncharacterized protein
STRINGXP_010040340.18e-94(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2425824
Publications ? help Back to Top
  1. Vidi PA, et al.
    Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles.
    J. Biol. Chem., 2006. 281(16): p. 11225-34
    [PMID:16414959]
  2. Ytterberg AJ,Peltier JB,van Wijk KJ
    Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.
    Plant Physiol., 2006. 140(3): p. 984-97
    [PMID:16461379]
  3. Lundquist PK, et al.
    The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.
    Plant Physiol., 2012. 158(3): p. 1172-92
    [PMID:22274653]