PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.L03694.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 260aa    MW: 28824.5 Da    PI: 8.3506
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.L03694.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.2e-12146253297
                       EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 
                       +k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d++   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v 
  Eucgr.L03694.1.p 146 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmseetvrQVESGRGADVIVRDLDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAAGDEVG 238
                       5889************************99888887555568999*****8887777788888*************999***********999 PP

                       EEE-SS.SEE..EEEEE CS
                B3  82 Fkldgr.sefelvvkvf 97 
                       ++   + s  e++++++
  Eucgr.L03694.1.p 239 IYW--EpSASEFHFSLL 253
                       995..445555577665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-15144253IPR015300DNA-binding pseudobarrel domain
CDDcd100179.39E-18145253No hitNo description
SMARTSM010190.0034145256IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-15146256IPR015300DNA-binding pseudobarrel domain
PfamPF023624.7E-9147251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGSSSSRVSH LQDHEQKPVG DHLRSEVHSP PPSMDSSSCL SSLHDQEKDR DEGARGTSFA  60
GVVVSREFFS VAPNRTTKEV GGPSQEIVPA QLKRKSVALP TDAETLIVEK KAKCKRTQKG  120
KKEASGCDAE EVSTELTLLF DPYKIKKRLT QSDLGHLSRL LIGRDFVKSH FLRWMSEETV  180
RQVESGRGAD VIVRDLDTCS EHRLVFVFWA SSGSYVLKGG WIKEFVKRRG LAAGDEVGIY  240
WEPSASEFHF SLLHRANQA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.L03694.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042934.10.0PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5001e-165A0A059C500_EUCGR; Uncharacterized protein
STRINGXP_010042934.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.15e-29B3 family protein