PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000086_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 830aa MW: 94437.7 Da PI: 9.5229

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000086_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.6	3.8e-27	32	120	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwe 77 fYneYA+++GFsvrk++ k+k++ge+t+r + Cskeg+r ++k++ + ++++raetrtgC+a++ +k+++ +k++ FANhyb_icon00000086_a.1.g00001.1 32 FYNEYARKMGFSVRKEQVVKNKKTGEVTSRIYSCSKEGYRPKDKRD-KLTKNPRAETRTGCEAQMGIKLNRcINKFV 107 9***************************************9999.99************************ PP FAR1 78 vtkleleHnHela 90 v+++++ HnH+l+ FANhyb_icon00000086_a.1.g00001.1 108 VYDFREAHNHALV 120 *********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-23	32	120	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-6	242	279	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.963	491	527	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
ITNIGGESSL ADTSCKPKFG MEFDSEEAAY IFYNEYARKM GFSVRKEQVV KNKKTGEVTS 60 RIYSCSKEGY RPKDKRDKLT KNPRAETRTG CEAQMGIKLN RCINKFVVYD FREAHNHALV 120 SEECAYMLRS QRGVSTPQGS ELDLVCDSGV GLKECYELMG RQAGGRESLG YIKQDLKNYL 180 RSRRQKQLAF GEAGSLLSYF QKQQLENPSF FHVVQLDSEE QITNVFWADA KMILDYGQFG 240 DVVSFDTTYR TNKDNRPLGV FVGFNHHREV IIFGAALMMQ QWRKAISVVM PDTYHRLCIW 300 HIMQNAMKKV NHVFRSRTGV HKVLSKFIDS YEEEDEFLAA WDAMLTEYNV HGDEWFKRIF 360 EVRRKWAYAY VRGQWCAGLQ TTQISESING DLKDYLQSDH NLVEFFKHFE RVVNDKRYKE 420 LEAEYALCQK IPQVQRPIKM LIEAGNVYTK IIFEEFQNEF VSALDFYIKT TVDTGEDIVY 480 TVGDLDTSKE FRVIRKKSDN YVSCCCKLFE MNGVLCGHAI KILREVMNVK VIPSEYILNR 540 WTRKARSNSV KDMHGRDIQV DTKLQQTTWY RSLCSIFTKI SSRGAESKET YEVAFEHANK 600 LRTTIEEMLS SKRDGTNHEK DDQGSAPITE DTCVQAKGFR KRGGSRGRKR LTSQLERAYM 660 RKLAQMRQLL GKKGCSDADV QENGSKTGRQ ASGGRKNSET TSRPAQSSKE VIANISTDNV 720 ADVQANGSKR RRQASGGRKS TKTTSQTSPS SKEVAANIST DNVADVQANG SKRRRQASGG 780 RKSTKTTSQT SPSSKDVGKV DNLIQQASQQ HPTGHLESEH VQALNKTVGV

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

ITNIGGESSL ADTSCKPKFG MEFDSEEAAY IFYNEYARKM GFSVRKEQVV KNKKTGEVTS  60
RIYSCSKEGY RPKDKRDKLT KNPRAETRTG CEAQMGIKLN RCINKFVVYD FREAHNHALV  120
SEECAYMLRS QRGVSTPQGS ELDLVCDSGV GLKECYELMG RQAGGRESLG YIKQDLKNYL  180
RSRRQKQLAF GEAGSLLSYF QKQQLENPSF FHVVQLDSEE QITNVFWADA KMILDYGQFG  240
DVVSFDTTYR TNKDNRPLGV FVGFNHHREV IIFGAALMMQ QWRKAISVVM PDTYHRLCIW  300
HIMQNAMKKV NHVFRSRTGV HKVLSKFIDS YEEEDEFLAA WDAMLTEYNV HGDEWFKRIF  360
EVRRKWAYAY VRGQWCAGLQ TTQISESING DLKDYLQSDH NLVEFFKHFE RVVNDKRYKE  420
LEAEYALCQK IPQVQRPIKM LIEAGNVYTK IIFEEFQNEF VSALDFYIKT TVDTGEDIVY  480
TVGDLDTSKE FRVIRKKSDN YVSCCCKLFE MNGVLCGHAI KILREVMNVK VIPSEYILNR  540
WTRKARSNSV KDMHGRDIQV DTKLQQTTWY RSLCSIFTKI SSRGAESKET YEVAFEHANK  600
LRTTIEEMLS SKRDGTNHEK DDQGSAPITE DTCVQAKGFR KRGGSRGRKR LTSQLERAYM  660
RKLAQMRQLL GKKGCSDADV QENGSKTGRQ ASGGRKNSET TSRPAQSSKE VIANISTDNV  720
ADVQANGSKR RRQASGGRKS TKTTSQTSPS SKEVAANIST DNVADVQANG SKRRRQASGG  780
RKSTKTTSQT SPSSKDVGKV DNLIQQASQQ HPTGHLESEH VQALNKTVGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011468393.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004304854.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-113	FAR1-related sequence 5