PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000192_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 71aa MW: 7983.41 Da PI: 10.5637

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000192_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	101.1	4.1e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaevavi+fs++g+lye++s FANhyb_icon00000192_a.1.g00001.1 9 KRIENATSRQVTFSKRRNGLLKKAHELSVLCDAEVAVIVFSQKGRLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.436	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-42	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.20E-39	3	61	No hit	No description
SuperFamily	SSF55455	1.06E-30	3	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-28	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MVRGKIEMKR IENATSRQVT FSKRRNGLLK KAHELSVLCD AEVAVIVFSQ KGRLYEFCSS 60 DASLRVAILA I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	2e-18	1	61	1	61	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269\|PubMed:21609362, ECO:0000269\|PubMed:21689171}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018499516.1	5e-35	PREDICTED: MADS-box protein AGL42-like
Swissprot	Q9FIS1	1e-32	AGL42_ARATH; MADS-box protein AGL42
TrEMBL	A0A0D4ZY44	7e-33	A0A0D4ZY44_PYRPY; SOC1-like MADS-box protein
TrEMBL	A9YTS4	3e-33	A9YTS4_9LAMI; SOC1-like protein 1
TrEMBL	V4S869	1e-33	V4S869_9ROSI; Uncharacterized protein
STRING	XP_009341300.1	4e-35	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.4	4e-35	AGAMOUS-like 42