PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000292_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 234aa MW: 26234 Da PI: 6.9587

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000292_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33.3	1.1e-10	210	234	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r++W+peLH+rF++a++qLGGs+ FANhyb_icon00000292_a.1.g00001.1 210 KQRRNWSPELHRRFLHALQQLGGSH 234 79*********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-7	208	232	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MLMNSTEEMQ GSKLGLYVKA LEEEKQKIQV FQRELPLCLE LVTQAIERCK QEISDNSIEY 60 RHGQSECSEQ TSSEGHVFEE FIPLKRSSSS DSDDEELEES DHLRNKTNDK DKSHSGDKKK 120 SDWLRSVQLW NTTPDVPKKE ELPRKASVVE VKRNGGAFHP FQKEKSIGNT NGAVVKSPAS 180 APATSSTADT VSGGSGGGNS KKEDKEGQRK QRRNWSPELH RRFLHALQQL GGSH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297138.1	1e-149	PREDICTED: probable transcription factor GLK2
Swissprot	Q9FPE8	3e-71	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2P6R1V1	1e-145	A0A2P6R1V1_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004297138.1	1e-148	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	6e-55	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]