PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000333_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 182aa    MW: 20139 Da    PI: 8.2846
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000333_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-161970156
                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                      + ykG+r +  +g+Wv+eIr+p+++    r++lg+++ +e+Aa+a++aa  +++ge
  FANhyb_icon00000333_a.1.g00001.1 19 CLYKGIRMRV-WGKWVSEIRVPKSR---GRIWLGSYDAPEKAARAYDAALYCIYGE 70
                                      56*****999.**********9664...7***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-91970IPR001471AP2/ERF domain
CDDcd000183.62E-261977No hitNo description
SuperFamilySSF541714.45E-182077IPR016177DNA-binding domain
SMARTSM003809.2E-292083IPR001471AP2/ERF domain
PROSITE profilePS5103219.9542077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-252177IPR001471AP2/ERF domain
PRINTSPR003674.6E-82132IPR001471AP2/ERF domain
PRINTSPR003674.6E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDLPTTSKSK KVRREKTPCL YKGIRMRVWG KWVSEIRVPK SRGRIWLGSY DAPEKAARAY  60
DAALYCIYGE CGRFNFPGDR RPVLPAGSAV SLSKFDIQQI AMNFASSYVP VSLPVSATIK  120
AEAQADTPTS PLVSKDMASK YEVKVDPLAP TCATGVGSAD PPEDFQLDDF LVLDTDWISD  180
FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1321771572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458844.11e-130PREDICTED: ethylene-responsive transcription factor ERF015
SwissprotQ6NLD52e-49ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLA0A3Q8TB931e-127A0A3Q8TB93_FRAAN; Transcription factor ERF8
STRINGXP_004288858.11e-129(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154791011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.18e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]