PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000375_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24039.3 Da    PI: 8.0936
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000375_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.54.2e-1910461551
                                      HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                            SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                      +Rr++++KKA+ELS+LCdaevavi f s+gkl+eys+
  FANhyb_icon00000375_a.1.g00001.1 10 RRRATLIKKAKELSILCDAEVAVIAFTSDGKLHEYST 46
                                      6**********************************96 PP
2K-box21.59.5e-0981167893
                             K-box   8 sleeakaeslqqel.akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                       ++++++ ++++ e+   L+ +   L+  + ++ G+ L+ Ls +eL  Le + +++l+++ +kK+ell++ ++++ k 
  FANhyb_icon00000375_a.1.g00001.1  81 AVSNEEVQKSSDEVlHALQGQHAALELDKLRREGKALDGLSREELCALEIEQHRALESVLKKKEELLVRLVRKSNKE 157
                                       46677777777775268*********999****************************************99999888 PP

                             K-box  84 ekelqeenka 93 
                                        +++q ++++
  FANhyb_icon00000375_a.1.g00001.1 158 RDRHQAIQER 167
                                       7777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.311148IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-8747IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-18962IPR002100Transcription factor, MADS-box
PfamPF003198.5E-151044IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-121025IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-122546IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MQETEVPGRR RRATLIKKAK ELSILCDAEV AVIAFTSDGK LHEYSTNSVE HTLSRYQNYK  60
SGLVRTTKMD SDAPEERRRE AVSNEEVQKS SDEVLHALQG QHAALELDKL RREGKALDGL  120
SREELCALEI EQHRALESVL KKKEELLVRL VRKSNKERDR HQAIQERTRE IPYLQLFPEN  180
STGFSTSSKA VSLSNCPTQV MDIDLLRLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309209.11e-145PREDICTED: agamous-like MADS-box protein AGL15
TrEMBLA0A2P6QDU01e-88A0A2P6QDU0_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004309209.11e-144(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2563223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.13e-19AGAMOUS-like 15