PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000409_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SBP
Protein Properties Length: 228aa    MW: 25019.8 Da    PI: 10.3659
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000409_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.13e-1519494878
                                      SEEETTT--SS--S-STTTT-------S--- CS
                               SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                                      +fh+l efD++krsCrrrLa+hnerrrk+q+
  FANhyb_icon00000409_a.1.g00001.1 19 QFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 49
                                      7***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114112.827147IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.7E-41734IPR004333Transcription factor, SBP-box
PfamPF031105.3E-81846IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-121852IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVCETTFHCW EPVNSRSRQF HQLPEFDQGK RSCRRRLAGH NERRRKPQPG SMMSTRFGRL  60
SSSIYENSNR VGSFLMDFTA YPRDGRDAWA TARTSERPPA NQTVTATGKF LQHQWQSNPE  120
NNRSNLYLQG SAGGTSYPGP GIPPGECVTG VTDSSCALSL LSSQPWASRN RGVGTNAFLN  180
TQGAPMAQSI ANAGPVNPFP TTSWGFKGNE AGSSSHEMKS ISNRILGF
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304380.21e-144PREDICTED: squamosa promoter-binding-like protein 9
SwissprotA3C0571e-30SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLG9JWE91e-142G9JWE9_FRAAN; SQUAMOSA promoter binding protein-like protein
STRINGXP_004304380.11e-143(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-27squamosa promoter binding protein-like 9