PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000450_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 143aa    MW: 15796.8 Da    PI: 10.7394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000450_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-073457226
                                      -S---SGGGGTS--TTTTT-SS-SS CS
                           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                      +++ Cr f +   C++G+ C+F+H+
  FANhyb_icon00000450_a.1.g00001.1 34 REATCRQFEE-NSCNRGGYCNFMHV 57
                                      6789**9999.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.70.3305.8E-4229IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549282.21E-5233IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.0E-161438IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010311.5913259IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-53458IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-43756IPR000571Zinc finger, CCCH-type
PRINTSPR018482.0E-164961IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
KEEDQAAAAL QALQGRFYNG RPIIADFSPV TDFREATCRQ FEENSCNRGG YCNFMHVKLI  60
GRELRRKLYG RYRGFRASRS RSRSRSLSPP RHRRDREGTT GRGIIEGMGG EARIGMTGTE  120
TMGGGDMAVP GGAEPGAGAL WRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A9e-18177112188Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNecessary for the splicing of pre-mRNA. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300085.12e-62PREDICTED: splicing factor U2af small subunit B
RefseqXP_011465001.12e-62PREDICTED: splicing factor U2af small subunit B
SwissprotQ9ZQW82e-39U2AFA_ORYSJ; Splicing factor U2af small subunit A
TrEMBLA0A2P2M1R55e-42A0A2P2M1R5_RHIMU; Uncharacterized protein
STRINGXP_004300085.16e-62(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2189333
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]