PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000565_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 489aa    MW: 56699.1 Da    PI: 8.019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000565_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.9e-19199292296
                                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                       fkv ++s + ++++l+lpk f++++  k  ++++  l+ + g +sW vkl+y+  +gr+ +++GW +Fv+++ Lkeg
  FANhyb_icon00000565_a.1.g00001.1 199 FKVPMHSTYINHNLLWLPKAFVKTYLVK--QPTDAALKISGGkKSWPVKLRYEEAKGRVKFQSGWTDFVRDKSLKEG 273
                                       578889*******************544..55677777766669********************************* PP

                                       -EEEEEE-SSSEE..EEEE CS
                                B3  78 DfvvFkldgrsefelvvkv 96 
                                       D++ F l+++++  + vk+
  FANhyb_icon00000565_a.1.g00001.1 274 DICEFVLVDSKRHVFEVKI 292
                                       ******9976666556655 PP
2B362.57e-20395488299
                                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                       fk+l+++ +   + l++p kfa+++  k+  +   +l+ e+ r+W v+l     sgr+++++GW  Fv++n+LkegD
  FANhyb_icon00000565_a.1.g00001.1 395 FKILLKPAYIHGNYLYMPAKFAKRYLVKQ--PGHAILQVERKRTWYVNL--HYASGRTTIQSGWATFVQDNDLKEGD 467
                                       57888888888999***********5553..4469**************..999999******************** PP

                                       EEEEEE-SSSEE..EEEEE-S CS
                                B3  79 fvvFkldgrsefelvvkvfrk 99 
                                       ++vF+l+++ +f + v +fr+
  FANhyb_icon00000565_a.1.g00001.1 468 TCVFMLTDKIKFLFDVVIFRS 488
                                       *****9988777677777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-1517115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-1622116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.17924117IPR003340B3 DNA binding domain
SMARTSM010195.0E-525117IPR003340B3 DNA binding domain
CDDcd100174.39E-1025115No hitNo description
Gene3DG3DSA:2.40.330.105.4E-20193296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-20194293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.578198296IPR003340B3 DNA binding domain
PfamPF023622.4E-17199292IPR003340B3 DNA binding domain
SMARTSM010198.5E-14199296IPR003340B3 DNA binding domain
CDDcd100174.56E-18199292No hitNo description
Gene3DG3DSA:2.40.330.103.5E-23388488IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-23389488IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.367394489IPR003340B3 DNA binding domain
CDDcd100177.31E-18395487No hitNo description
PfamPF023622.2E-18395487IPR003340B3 DNA binding domain
SMARTSM010191.8E-10395489IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASSYVRRKC ADHRPSSSAT TPRRFLEVIL DDTSRERKLR IPKSFLDIYG EDLSNWVYFK  60
LPYGPELDIG LTSFNGEVWF RKGWPEFSKL YSLEKGYSLI FGYEGNSRFQ VSIFDGSNNM  120
EIDYTTRRML GSEESDQDDD ISLDISEDIR PNVDSEERVQ KETHWSKSEM LRKNQFVAER  180
HGGGKARLFQ RAKSYNCSFK VPMHSTYINH NLLWLPKAFV KTYLVKQPTD AALKISGGKK  240
SWPVKLRYEE AKGRVKFQSG WTDFVRDKSL KEGDICEFVL VDSKRHVFEV KITTANHTLS  300
PDIDDGNDEE DEQEDEDSDD ESIEILDHFP PHLETKEKSP LESQPRKRKR HSSRTLIDIF  360
PEERPVVPRK MHPPITASSG KVPRANGFES ANPDFKILLK PAYIHGNYLY MPAKFAKRYL  420
VKQPGHAILQ VERKRTWYVN LHYASGRTTI QSGWATFVQD NDLKEGDTCV FMLTDKIKFL  480
FDVVIFRST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1638548739141B3 domain-containing transcription factor VRN1
4i1k_B1e-1638548739141B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024186299.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6RMY31e-154A0A2P6RMY3_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301864.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-19related to vernalization1 1