PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000662_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 273aa MW: 32086.2 Da PI: 9.189

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000662_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.2	1e-23	21	102	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 +W +e+++Li++r e+e++++ +k+ k+lWe+vs++m+ rgf+r+++qCk+kw+nl ryk ++++ + + + FANhyb_icon00000662_a.1.g00001.1 21 QWGPEETRELIAIRGELERDSSVAKRSKALWEAVSSRMSTRGFNRTSEQCKCKWKNLLIRYKGKETSDPE----TGR 93 7************************************************************9999997....467 PP trihelix 78 tcpyfdqle 86 +cp+f++l+ FANhyb_icon00000662_a.1.g00001.1 94 KCPFFEELQ 102 8****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-5	18	80	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-4	18	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-6	20	78	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.269	20	78	IPR017877	Myb-like domain
Pfam	PF13837	9.1E-22	21	103	No hit	No description
CDD	cd12203	9.09E-20	21	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MYGGGGDEDA MRMMVTSPTG QWGPEETREL IAIRGELERD SSVAKRSKAL WEAVSSRMST 60 RGFNRTSEQC KCKWKNLLIR YKGKETSDPE TGRKCPFFEE LQEVFTERER NMQRLLLESE 120 AGVSRAKKRV KKGRSGRSSD ELSEDPDEDE DDGNGNVKKR KAERVVTPRV MNATASFGSG 180 SGSVPEMLKE FLKQQQRMEI EWREMMERRA RERQLFEQEW QQRMVKVERE RLMVEKAWRE 240 REEQRRMREE SRAERRDALV TSILNKLIDE TNF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300404.1	1e-170	PREDICTED: trihelix transcription factor GT-3b-like
Refseq	XP_011465302.1	1e-170	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A2P6PB87	1e-165	A0A2P6PB87_ROSCH; Putative transcription factor MYB family
STRING	XP_004300404.1	1e-169	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-28	Trihelix family protein