PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000755_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 235aa    MW: 26715.8 Da    PI: 5.9066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000755_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19142193256
                               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                       +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t eeAa a+++a+ +++g+
  FANhyb_icon00000755_a.1.g00001.1 142 HYRGVRQRP-WGKFAAEIRDPKKNG--ARVWLGTYETSEEAAVAYDRAAYRMRGA 193
                                       7********.***********9998..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-32141201IPR001471AP2/ERF domain
PfamPF008475.3E-14142192IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23142202IPR016177DNA-binding domain
SMARTSM003801.7E-35142206IPR001471AP2/ERF domain
CDDcd000181.37E-31142201No hitNo description
PROSITE profilePS5103223.973142200IPR001471AP2/ERF domain
PRINTSPR003671.6E-10143154IPR001471AP2/ERF domain
PRINTSPR003671.6E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTELNYLDDH FHLHPNLIID PVTEQWGDLP FKFDDSEDML VYNSLWNAFS SDWSTTSMED  60
VKPEPAACNY FDELHQILQP QDDQVSINMS APTELSSPET ESSSTVSQTS YDQIQEEVPT  120
PKVQNKAVVL GGGTSSVSRG RHYRGVRQRP WGKFAAEIRD PKKNGARVWL GTYETSEEAA  180
VAYDRAAYRM RGAKALLNFP HRIGLNEPPP VRVTGKLKTL KPETVLHRRL QERRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-36138207170ATERF1
3gcc_A7e-36138207170ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307778.11e-161PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A3Q8TBB01e-175A0A3Q8TBB0_FRAAN; Transcription factor ERF72
STRINGXP_004307778.11e-161(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-47ethylene responsive element binding factor 2