PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000768_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 415aa    MW: 45659.4 Da    PI: 5.619
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000768_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.42.9e-33152210159
                                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                       ldDgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver+++d k+v++tYeg+Hnhe
  FANhyb_icon00000768_a.1.g00001.1 152 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCLVRKHVERASHDLKYVITTYEGKHNHE 210
                                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-36137212IPR003657WRKY domain
SuperFamilySSF1182907.72E-29145212IPR003657WRKY domain
PROSITE profilePS5081138.251147212IPR003657WRKY domain
SMARTSM007745.3E-38152211IPR003657WRKY domain
PfamPF031063.4E-25153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
ASLGPAFSFD EMSEMAEGNR TSVKVDRDSV WAKIQSGEDV KSGYDGKTDG LERTSSTSVV  60
TDLSDPLSAT QGKSPAIFES AETPEFSSAL ASVDEDDQAA QRGISLGDDA DNEESESKRR  120
KKDSCMIETS IATRAVREPR VVVQIESEID ILDDGYRWRK YGQKVVKGNP NPRSYYKCTS  180
AGCLVRKHVE RASHDLKYVI TTYEGKHNHE VPAARNSNHI NSSGANGHTP AASAQPLALS  240
RNTNIPKPET QVQDLAPHFD RKPEFHDEYL RPTYLGNFNN DLKFGASSIY QMKFPPLQNA  300
MPYGSYGLNA SHHNVAHQAG SVVPDFSMSL PLNLPPTGNL GLTGYDFNNG KSVCPVQPYY  360
SGQQLQENDL RFLKPKQEQK DENLYDACLP IIDQGTASLS PNSSLFYRIM GGYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-35143213878Probable WRKY transcription factor 4
2lex_A6e-35143213878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304815.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
TrEMBLA0A2P6R5300.0A0A2P6R530_ROSCH; Putative transcription factor WRKY family
STRINGXP_004304815.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.19e-59WRKY DNA-binding protein 34