PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000793_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 224aa    MW: 25451.3 Da    PI: 8.48
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000793_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-11137218795
                                       .-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                                B3   7 psdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                       +s+v++   l  p++f+++++++  ++++l++e+  ++  W   +  +k+s r  +++GW  F k+n++kegD++ F
  FANhyb_icon00000793_a.1.g00001.1 137 QSHVNRGP-LLTPRSFLRNISKP--KKVKLQVENvCWNVIWLHPY--NKSS-R--FSGGWVPFFKENKVKEGDICDF 205
                                       45555555.666*****988744..66778888855566666666..6665.4..89******************** PP

                                       EE-SSSEE..EEE CS
                                B3  83 kldgrsefelvvk 95 
                                       +l+++s++  v+k
  FANhyb_icon00000793_a.1.g00001.1 206 ELISKSTEVAVIK 218
                                       **97655544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.064155IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-51364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-71459IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-13124223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-14124221IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-12129223No hitNo description
PROSITE profilePS508639.883130224IPR003340B3 DNA binding domain
SMARTSM010194.8E-4131220IPR003340B3 DNA binding domain
PfamPF023621.7E-9137217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
SLPFNFKEIM QIKRAFFLEK GLEEFVVGNS LKQGESLVLQ YVGIAKFFVQ IYGLNHCERS  60
KASEISLVDS ENEEEDVIII DSDSDPEAQD SEISLYSESK CPRDLVCGRK VSRRGGVRNI  120
ATISPSGNPC FSIRICQSHV NRGPLLTPRS FLRNISKPKK VKLQVENVCW NVIWLHPYNK  180
SSRFSGGWVP FFKENKVKEG DICDFELISK STEVAVIKVT IRRM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308414.11e-149PREDICTED: B3 domain-containing protein At2g16210-like isoform X1
TrEMBLA0A2P6R2S61e-85A0A2P6R2S6_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004308414.11e-148(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2564123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-08related to vernalization1 1