PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00000958_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 163aa    MW: 18086 Da    PI: 9.5483
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00000958_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.8e-1955137391
                                       EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                                B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                       kv+ ps+v+   +l+lp+kf++eh  + +e+++++led+sgr+++ k+    ++g+  l++GW++F  +++L +gD+
  FANhyb_icon00000958_a.1.g00001.1  55 KVMRPSNVTGCFCLSLPRKFCSEHL-P-KEDTMIVLEDKSGREFQTKY--LVGKGG--LSAGWRGFSISHKLLAGDV 125
                                       8999********************5.3.36679***************..666666..9****************** PP

                                       EEEEE-SSSEE. CS
                                B3  80 vvFkldgrsefe 91 
                                       vvF+++  s+f+
  FANhyb_icon00000958_a.1.g00001.1 126 VVFHRVTPSKFK 137
                                       ****77656663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-2047139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2248139IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-2351139No hitNo description
SMARTSM010199.0E-1353139IPR003340B3 DNA binding domain
PROSITE profilePS5086310.98353151IPR003340B3 DNA binding domain
PfamPF023621.1E-1655138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVSADTMKSE SEKQKRCKKT TVESLYNTSE AQSSVMERAK KLEANLAPEF PRVAKVMRPS  60
NVTGCFCLSL PRKFCSEHLP KEDTMIVLED KSGREFQTKY LVGKGGLSAG WRGFSISHKL  120
LAGDVVVFHR VTPSKFKVTD GTFMGCLYGS FVLLQVPHPE GFG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024167395.14e-82B3 domain-containing protein Os01g0234100-like
TrEMBLA0A2P6PMB28e-81A0A2P6PMB2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004294824.12e-63(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-32B3 family protein