PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00000995_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 191aa MW: 21674.4 Da PI: 7.9607

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00000995_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.3e-20	45	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgk 75 +fY++Y+ vGF rk+ + +s ng i +r++vC keg+r+++ + + +r++r++tr++C+a+++++ ++ + + FANhyb_icon00000995_a.1.g00001.1 45 RFYSAYSAAVGFGCRKDDKGES--NGLIRWRQWVCCKEGTRDKKYLEaDGLSRTPRKQTRVNCQARFRINYNDgSRV 119 5**************99998..9*************998875677899***************99 PP FAR1 76 wevtkleleHnHela 90 ++v+ ++ eHnHela FANhyb_icon00000995_a.1.g00001.1 120 YMVKIFVPEHNHELA 134 *************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-18	45	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDASENEKQP NKGVEDVAVD VPGFGSLTIA DVRALTFETV DEAERFYSAY SAAVGFGCRK 60 DDKGESNGLI RWRQWVCCKE GTRDKKYLEA DGLSRTPRKQ TRVNCQARFR INYNDGSRVY 120 MVKIFVPEHN HELATGNQIA FVRAHRHVSD AALALTNTMT RVSIRPYHTY EYMVEQAGGY 180 LVVGFTMKDL Y

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004308570.1	1e-123	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004297887.1	1e-128	(Fragaria vesca)
STRING	XP_004308570.1	1e-122	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15759	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-21	FAR1-related sequence 5