PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001084_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 108aa    MW: 11798.4 Da    PI: 8.1147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001084_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.6e-121741327
                                      S---SGGGGTS--TTTTT-SS-SSS CS
                           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                       + C++f++t  Ck+G rCkF+H++
  FANhyb_icon00001084_a.1.g00001.1 17 APDCPYFLKTQRCKFGLRCKFNHPK 41
                                      589********************96 PP
2zf-CCCH42.61e-136488327
                                      S---SGGGGTS--TTTTT-SS-SSS CS
                           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                                      +++C f+++tG+CkyG++CkF+H++
  FANhyb_icon00001084_a.1.g00001.1 64 EPPCAFYLKTGQCKYGATCKFNHPK 88
                                      79*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6051442IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-51441IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-91741IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-61944IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-52042IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.0236189IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-66188IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-116488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-76489IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-76687IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MVPLAAPSES LPERPGAPDC PYFLKTQRCK FGLRCKFNHP KDKLATAGAS ENGDVNALPE  60
RPSEPPCAFY LKTGQCKYGA TCKFNHPKDI QIPSTTQENK SAETETAL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295542.12e-70PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q33e-36C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2P6Q7Y62e-64A0A2P6Q7Y6_ROSCH; Putative transcription factor C3H family
STRINGXP_004295542.17e-70(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-38floral homeotic protein (HUA1)