PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001105_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 269aa    MW: 29266.1 Da    PI: 10.6221
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001105_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.7e-32196254259
                                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                        D+y+WrKYGqK++kgs++pr+YY+C+s+ gCp++k+ver+ +dp+++++tYeg+Hnh+
  FANhyb_icon00001105_a.1.g00001.1 196 ADEYSWRKYGQKPIKGSPHPRGYYKCSSQrGCPARKHVERAVDDPSMLIVTYEGDHNHS 254
                                       69*************************999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-15147193IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-34182255IPR003657WRKY domain
PROSITE profilePS5081130.733190256IPR003657WRKY domain
SuperFamilySSF1182905.36E-27192254IPR003657WRKY domain
SMARTSM007741.8E-38195255IPR003657WRKY domain
PfamPF031065.8E-28197253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
KVISLLDRGR TGHARFRRGP VNTTTTATAS SSLPQQAPQV LTRETRQPSF RCQDATNLKT  60
EQSQSSSAFK VYCPKPVLRL PPLPKSGTSF SFSASPAVSG SNSFMSGDGE TTTTLQHSMS  120
SGFQLTNMSN MSVSSAGKPP LPSSSFKRKC HSVDDSTAMR CGSSSSRCHC SKKRKSRVKR  180
VTRIPAISTK MADIPADEYS WRKYGQKPIK GSPHPRGYYK CSSQRGCPAR KHVERAVDDP  240
SMLIVTYEGD HNHSQAVTEA MAAIVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22182254172WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291076.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX03e-86WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S5SLA80.0A0A1S5SLA8_FRAVE; WRKY transcription factor 9
STRINGXP_004291076.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-65WRKY DNA-binding protein 7