PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001112_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 318aa    MW: 35795 Da    PI: 4.4006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001112_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS143.22.7e-441073172178
                              GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknss 75 
                                       +elL++ Aeav++++   a++++a+l++l   s++g +++++la +f ++L+ + ++s +   k  +++  s++ns 
  FANhyb_icon00001112_a.1.g00001.1 107 TELLFAGAEAVEAQNWVFASNIIAKLNTLllGSENGdNSFHKLAMFFSQGLHYKTSNSPQVPHKPAQTKLFSSDNSF 183
                                       789*************************9987888868******************955555566688888877777 PP

                              GRAS  76 eelaal...............................klfsevsPilkfshltaNqaIleavegeervHiiDfdisq 121
                                       ++la++                               ++++e+sP++kf+h+taNqaIlea++++e +H+iDfdi++
  FANhyb_icon00001112_a.1.g00001.1 184 HKLAMFfsqglhyktsnspqvphkpavsrntdtmssfQMLQELSPYVKFAHFTANQAILEATQEDEDIHVIDFDIME 260
                                       777666999*************************99999************************************** PP

                              GRAS 122 GlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                                       G QWp+L+  La R+ +  +slR+T++   +++s    ++tg+rL++f e+++++f f
  FANhyb_icon00001112_a.1.g00001.1 261 GSQWPSLMVDLAMRKgRRCASLRVTAITV-DQQSVALSQQTGRRLKEFSESINLSFIF 317
                                       ***************55567********9.55788899******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.74280318IPR005202Transcription factor GRAS
PfamPF035149.3E-42107317IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEVELIDHPF NPSYIDELYD CSFESDSSFQ TSDFFTPCTT SVDRNLDHEC LDRLQQIEAQ  60
LMDIDSSISE SDVIDVNGLV GSVHVLTEGN SLLKEIQIEW LEESSLTELL FAGAEAVEAQ  120
NWVFASNIIA KLNTLLLGSE NGDNSFHKLA MFFSQGLHYK TSNSPQVPHK PAQTKLFSSD  180
NSFHKLAMFF SQGLHYKTSN SPQVPHKPAV SRNTDTMSSF QMLQELSPYV KFAHFTANQA  240
ILEATQEDED IHVIDFDIME GSQWPSLMVD LAMRKGRRCA SLRVTAITVD QQSVALSQQT  300
GRRLKEFSES INLSFIFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2018131754192Protein SCARECROW
5b3h_A2e-2018131753191Protein SCARECROW
5b3h_D2e-2018131753191Protein SCARECROW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308265.20.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2P6RRU91e-134A0A2P6RRU9_ROSCH; Putative transcription factor GRAS family
STRINGXP_004308265.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-25GRAS family protein