PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00001118_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 243aa MW: 28042.6 Da PI: 9.0353

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00001118_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.3	4.5e-22	49	139	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkw 76 fY +YAke+GF+vrk+ +++s+r+g++t r++vCs eg+r+e++++ ++k r +++ tr++C + +k++ k ++ + FANhyb_icon00001118_a.1.g00001.1 49 FYYDYAKEMGFDVRKDDMRTSTRTGRVTIRKWVCSAEGERREKHTDiNNKVRMPKKLTRCHCPCLFKIRYFKkNNSY 125 9***************************************99997788888************99889* PP FAR1 77 evtkleleHnHela 90 v +++++H+H+l+ FANhyb_icon00001118_a.1.g00001.1 126 IVVDFRTDHSHDLV 139 ************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-19	49	139	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSNKDASKDE PQHEMSHSNL QNNGIRYDKL SAENLIGVEF VTVEAAETFY YDYAKEMGFD 60 VRKDDMRTST RTGRVTIRKW VCSAEGERRE KHTDINNKVR MPKKLTRCHC PCLFKIRYFK 120 KNNSYIVVDF RTDHSHDLVQ PHESHLLRSH RSVLDSDLAL AKSMRRASIK TCHAYEYMVD 180 VSGGYANVGF TLKDLYNKLD ASQREDMIGG DANATLGYLK GKAVEDKKLF YKYSTDENKR 240 SAN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024179075.1	1e-131	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P6RCK2	1e-101	A0A2P6RCK2_ROSCH; Putative transcription factor FAR family
TrEMBL	A0A2P6S331	1e-103	A0A2P6S331_ROSCH; Putative transcription factor FAR family

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15947	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-25	FAR1-related sequence 5