PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001220_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 258aa    MW: 28444.3 Da    PI: 4.6077
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001220_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.1e-0827492346
                                      -HHHHHHHHTTTS-HHHHHHHHHH CS
                   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                                       W+ Ia++++ gRt++++k++w++
  FANhyb_icon00001220_a.1.g00001.1 27 VWSQIAARLP-GRTDNEIKNFWNS 49
                                      6*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.84E-52848No hitNo description
PfamPF002491.0E-52849IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-112856IPR009057Homeodomain-like
PROSITE profilePS500906.2262851IPR017877Myb-like domain
SuperFamilySSF466891.39E-62857IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTSISRVFSS GGGNIPTWNP FLEILPVWSQ IAARLPGRTD NEIKNFWNSA LKKRLKNNIS  60
TSTSSPDESD HSSEPNVNIG GAIRPFIPAM HNEQDMLMSM MYIDSSTSSS SASMHVINNS  120
TFEPSFSVLD SSSLLNYVDH TGSTQLPEGQ YGDYGNYLEA GHKMGIEGDH LCLPPLETSR  180
RNLTENKNGQ VVDKISNNNI NHFHNNNSNN CFINTASNMS FKVDDGDIFG QAEAGGSLRV  240
GEEWDFEGFM QDISCFLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308219.11e-169PREDICTED: transcription factor MYB46
TrEMBLA0A2P6S7H61e-112A0A2P6S7H6_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004308219.11e-168(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-13myb domain protein 83