PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001248_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 62aa    MW: 7108.86 Da    PI: 7.6959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001248_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09551246
                                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
                   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                      g+WT    + + +a + + ++   +W+  ar +g g+t++++k ++  
  FANhyb_icon00001248_a.1.g00001.1  5 GSWTSRQNKMFENALAVYDKDtpdRWHNLARAVG-GKTAEEVKRHYER 51
                                      89********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.001257IPR017884SANT domain
SMARTSM007171.3E-7355IPR001005SANT/Myb domain
PfamPF002495.3E-6551IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-13660IPR009057Homeodomain-like
CDDcd001674.37E-6653No hitNo description
Gene3DG3DSA:1.10.10.609.2E-6659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MASSGSWTSR QNKMFENALA VYDKDTPDRW HNLARAVGGK TAEEVKRHYE RLVEDVNRIE  60
SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-24262666RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459550.17e-40PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1733e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P6PYP06e-39A0A2P6PYP0_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_008220806.12e-36(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-31RAD-like 6