PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001351_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 134aa    MW: 14662.6 Da    PI: 9.611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001351_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.7e-10103132131
                                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
                   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartm 31 
                                       r rWT+eE+ ++++a k++G   W +I + +
  FANhyb_icon00001351_a.1.g00001.1 103 RERWTEEEHNRFLEALKLYGRA-WQRIEESL 132
                                       78******************88.****8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.47E-797130IPR009057Homeodomain-like
PROSITE profilePS5129413.25998134IPR017930Myb domain
TIGRFAMsTIGR015575.2E-9101131IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.1E-6103131IPR009057Homeodomain-like
PfamPF002495.4E-7103133IPR001005SANT/Myb domain
CDDcd001671.53E-4105134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
FSGSNSDLSV AGSYAVAGGC AVTIPVGVSV TSFHQLRHGR DGSTHSCVSF AVVVVVPTSK  60
ISLSSTATTA LLVIAVLGAF TNERRNLFYT LLARKPYTIT KQRERWTEEE HNRFLEALKL  120
YGRAWQRIEE SLNS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022871881.14e-22protein LHY-like, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.14e-21circadian clock associated 1