PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00001429_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 115aa MW: 12348.8 Da PI: 5.4899

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00001429_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58	2.7e-18	2	53	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e FANhyb_icon00001429_a.1.g00001.1 2 LPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAE 53 799********************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.61	1	54	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-16	2	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
ELPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DVLQTQLALA QAEVVHLRVR 60 QTASISNHGL SPSSPSNSGS PSSSRFAGSQ ARPIFDMDMM MDHSSLGLGE SMWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-18	1	55	58	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-18	1	55	58	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004293726.1	4e-79	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	7e-35	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A314YWZ3	7e-72	A0A314YWZ3_PRUYE; LOB domain-containing protein 4
STRING	XP_004293726.1	1e-78	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-32	LOB domain-containing protein 4