PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00001572_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 162aa MW: 18157.9 Da PI: 6.1421

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00001572_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	50.8	3.4e-16	1	36	23	58
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 sYYrCt ++C++kk+vers+edp++++itYeg H h FANhyb_icon00001572_a.1.g00001.1 1 SYYRCTNPRCSAKKQVERSSEDPDTLIITYEGLHLH 36 8*********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-13	1	36	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-12	1	36	IPR003657	WRKY domain
PROSITE profile	PS50811	15.089	1	39	IPR003657	WRKY domain
Pfam	PF03106	5.8E-11	1	36	IPR003657	WRKY domain
SMART	SM00774	3.4E-7	1	38	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
SYYRCTNPRC SAKKQVERSS EDPDTLIITY EGLHLHFAYP FFHLTQAQNP NPPTKKPKKK 60 TSPAQPEDHH EQVAQESSRS LTPDPETDLH PSGTYADQPP QEFVEEERGS QGLLEDVVPF 120 MIRKPSSASS NSSCCSYRSP PTSPSSYSWP SYFDVGINHS IG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302766.1	1e-114	PREDICTED: probable WRKY transcription factor 49
TrEMBL	A0A2P6R9Y3	2e-64	A0A2P6R9Y3_ROSCH; Putative transcription factor WRKY family
STRING	XP_004302766.1	1e-114	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7118	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	6e-18	WRKY DNA-binding protein 49