PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001638_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 291aa    MW: 33406.2 Da    PI: 4.3048
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001638_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.1e-14195281899
                                       -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                                B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                       s + +++ +++p +fa +h ++k++   +    ++g+ W+ +++yr+++++ +   GWk  ++an+L+ gD ++F l
  FANhyb_icon00001638_a.1.g00001.1 195 SANDSLDYVCIPPDFAHRHLNEKPCAANIW---LNGEIWKSRFSYRRSDDTRW--YGWKAIAEANNLEKGDACLFVL 266
                                       556777899**********77788876666...778********999987733..39******************** PP

                                       -SSSEE..EEEEE-S CS
                                B3  85 dgrsefelvvkvfrk 99 
                                       +++ +f++ v++fr+
  FANhyb_icon00001638_a.1.g00001.1 267 INNVNFTFEVSIFRT 281
                                       *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-14178281IPR015300DNA-binding pseudobarrel domain
CDDcd100173.06E-15181280No hitNo description
SMARTSM010190.0014182282IPR003340B3 DNA binding domain
PROSITE profilePS5086310.221188282IPR003340B3 DNA binding domain
PfamPF023624.8E-11195281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-14197282IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
TNMEINYDCP LSSSRNEEHN VYGGMHVNLV MFVQYLYHTR RENEIHRRMQ IDDEDDEGNE  60
DEDEGDASDG VGFEDEGNED EDEDEGDEDE DDDINDDDYI AGLDDVPPCS KTVRKSTSAS  120
QLYRRNRSCG GTKAQSNIKH AADGLSSTRR SFLQERPEII ELRKSTALQR ANEYVNPCYS  180
SFVISLSHWN AHESSANDSL DYVCIPPDFA HRHLNEKPCA ANIWLNGEIW KSRFSYRRSD  240
DTRWYGWKAI AEANNLEKGD ACLFVLINNV NFTFEVSIFR TTEKVQIDPP H
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2565322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-07related to vernalization1 1