PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001738_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 432aa    MW: 48949 Da    PI: 7.341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001738_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12295340454
                                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                       +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  FANhyb_icon00001738_a.1.g00001.1 295 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINNL 340
                                       799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-4225211IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.7E-17289355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-13289345No hitNo description
PROSITE profilePS5088816.869291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-17295353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEEINILSSC SPPYSICQET SANTLQQRLQ LIVQNRPELW VYSIFWQASK DRNGVLSLSW  60
AGGHSRGTRD FSSKKLDNYY QPKFGLELQT PKKAINRQLQ ALFQEDMDMD INGDVTDSEW  120
FYFYTLSLTQ SFAAGHGNNN IVGRTFCSGA FVWLAGDHEF QLYECERVKE ARMYGIQTLV  180
CIPTPDGVIE LASLEVIKED WRFVQNSKLI FGLDKITTSC SVSNSNRGHA HVPQLQNTMF  240
PESDQNEWTT QGGRKVTVNN LSGSSSDSGP SENTSSTRLR KRRKSDKGER DSPINHVEAE  300
RQRREKLNHR FYALRSVVPN VSKMDKASLL SDAVVYINNL KTKIEELEAK IHAQPKKHKP  360
SVMSDNTLDY SQRTNSLTYR AAAATEVDVK IVGSEAMIRV RCPDDEDYPN ARLMNALKDL  420
ELHIHHASIS SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A1e-24231997180Transcription factor MYC3
5t0q_A1e-24231997180Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024174896.10.0transcription factor MYC2-like isoform X2
TrEMBLA0A2P6P4360.0A0A2P6P436_ROSCH; Putative transcription factor bHLH family
STRINGXP_004309579.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-54bHLH family protein