PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001774_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 266aa    MW: 30025.5 Da    PI: 4.7319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001774_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18108158255
                               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                        y+GVr+++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +l+g
  FANhyb_icon00001774_a.1.g00001.1 108 SYRGVRRRP-WGKYAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFALRG 158
                                       69*******.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.01E-21107167No hitNo description
PROSITE profilePS5103223.275108166IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22108168IPR016177DNA-binding domain
SMARTSM003801.0E-37108172IPR001471AP2/ERF domain
PfamPF008472.4E-13108158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29108167IPR001471AP2/ERF domain
PRINTSPR003673.7E-10109120IPR001471AP2/ERF domain
PRINTSPR003673.7E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEMESYSILQ FSNPSQFSPE SSFGNSSLDS FSWDDALLDT FNNDILNFPP FNTNDQPQDV  60
LLLDAVAKEP AMVEEETNWF GGAVKEEEVT SYSITFEGFE EKPRKEKSYR GVRRRPWGKY  120
AAEIRDSTRH GVRVWLGTFD SAEAAALAYD QAAFALRGPL AVLNFPVEVV RESLQEIKCK  180
YDVGCSPVVA LKRRHSMRRK SACKKNSNNK EQEKAKSSIS FNITKKRTTQ ENITAESNVV  240
VLEDLGAEYL EELLYQSSCE SASFSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-281091681574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289932.10.0PREDICTED: ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y99e-65ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3Q8TB210.0A0A3Q8TB21_FRAAN; Transcription factor ERF85
STRINGXP_004289932.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-47ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]