PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001828_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 229aa    MW: 25649.3 Da    PI: 5.1914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001828_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-0586108123
                                       EEETTTTEEESSHHHHHHHHHHT CS
                           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                       ykC+ C+k+F++   L  H  +H
  FANhyb_icon00001828_a.1.g00001.1  86 YKCETCNKVFKSYQALGGHRASH 108
                                       9************9999998887 PP
2zf-C2H212.20.00054147169123
                                       EEETTTTEEESSHHHHHHHHHHT CS
                           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                       ++Cp C ++Fs+   L  H r+H
  FANhyb_icon00001828_a.1.g00001.1 147 HECPVCFRVFSSGQALGGHKRSH 169
                                       79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-472110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0186108IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.15E-786108No hitNo description
PfamPF139126.2E-1286110IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.69986113IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-7142169No hitNo description
PfamPF139122.8E-11146169IPR007087Zinc finger, C2H2
SMARTSM003550.19147169IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245147174IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDSCANNNVE PEPVSSISDA TTEEDVAFCL MMLSRDKWKK QDKQQQEEQD YQDEDVEVEY  60
RSLDESDESE EQLIKFQRTK SSRGKYKCET CNKVFKSYQA LGGHRASHKK IKAASAANPN  120
PNRIVYEPEP DPEINHNAGS SSFVKTHECP VCFRVFSSGQ ALGGHKRSHV TGSAAINYTH  180
HHAPSMKSLA KLGDNMIDLN LPAPVDDDEM SQIELSAVSD AEFVNPIRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306958.11e-167PREDICTED: zinc finger protein ZAT9
TrEMBLA0A2P6SFP41e-122A0A2P6SFP4_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004306958.11e-167(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-38C2H2-like zinc finger protein