PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00001839_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 223aa MW: 25563.2 Da PI: 7.033

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00001839_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.5	9.8e-08	194	221	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 + hn+ Er+RR+ i++++++L l+P++ FANhyb_icon00001839_a.1.g00001.1 194 ELHNQSERNRRNAIKDKIHTLGGLVPNC 221 67************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.0E-6	189	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.715	191	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-5	194	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-8	194	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.59E-4	196	223	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MQNINNNQLQ EAVTYSVVNQ GFDFQSIPYE DFALVSDAVN SQTTVSKSQE HFVRWNSSVV 60 NPHADIAVNH VNPQNQEPFM SWNSSTLNSH TDVAVNHDNP QSQEHFIWWN SSTQDEIVNN 120 LPNIDQPHQS ILASQPLFSY EKVFPSESNK ERSKISKYAS ELSSRDVFKD DAVVISKEEF 180 IRKKNKRPKN KKSELHNQSE RNRRNAIKDK IHTLGGLVPN CTK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300961.1	1e-129	PREDICTED: uncharacterized protein LOC101314095
STRING	XP_004300961.1	1e-128	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF32455	2	2