PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001976_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 347aa    MW: 39270.1 Da    PI: 5.1535
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001976_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34141052102
                                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTS CS
                      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskeki 78 
                                       Fl+k+ye+++d++++ ++sws+  +sf+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         
  FANhyb_icon00001976_a.1.g00001.1  14 FLSKTYEMVDDSSTDPIVSWSAGDKSFIVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ--------- 81 
                                       9********************999****************************************9998......... PP

                                       EEEEESXXXXXXXXXXXXXXXXXX CS
                      HSF_DNA-bind  79 weFkhksFkkgkkellekikrkks 102
                                       weF+++ F +g+ +l+++i+r+k 
  FANhyb_icon00001976_a.1.g00001.1  82 WEFANDDFVRGQPQLMKNIHRRKP 105
                                       *********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.1E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDEVQGITGS LPPFLSKTYE MVDDSSTDPI VSWSAGDKSF IVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPQLMKNI HRRKPVHSHS LPNLQVQAQG  120
SSSLSEAERK SMKDEIERLN HEKECLAVEL QRHEQERQGM ELQMQFLKDR LQHMQEQQQS  180
MVAFVARVLQ RPELASNPVP QFELRDRKRR FSSVDWAYDN VSIGNGQMGS WQNVTRENME  240
TGKVLQLESF LTFWEDTIRE VGQTQLHAST NLELAESTSC GESPAVSCMQ RIVGHQSKLP  300
AIDMNSEPAA AVSPVLAESV SPVLAESVSP VPAGSVSPEP ARSVSPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-241010316120Heat shock factor protein 1
5d5u_B3e-241010325129Heat shock factor protein 1
5d5v_B3e-241010325129Heat shock factor protein 1
5d5v_D3e-241010325129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309634.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotO494031e-95HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1B0V8E60.0A0A1B0V8E6_FRAVE; Heat shock factor A4a
STRINGXP_004309634.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-98heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]