PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00002030_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 188aa MW: 20959.2 Da PI: 8.3972

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00002030_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.6	4.5e-31	35	85	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ FANhyb_icon00002030_a.1.g00001.1 35 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 85 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-29	32	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-14	34	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-21	35	86	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-7	37	85	IPR001005	SANT/Myb domain
CDD	cd06222	6.97E-10	87	166	No hit	No description
SuperFamily	SSF53098	6.98E-6	107	170	IPR012337	Ribonuclease H-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MFQQHKKPSS MNSHESHRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK 60 ATPKTIMRVM GVKGLTLYHL KSHLQVDNGH YFGGYCLSLG QQSAAFFVEL MCDSTSVLNC 120 ITSSSFAPPW PLRIAWLNCL SHIRLMTFHC THVLREGNSV ADRLTNLGLA SSSLIWHASP 180 PPEISSYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	35	85	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	35	85	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	35	85	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	35	85	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	35	85	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	35	85	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	35	85	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	35	85	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	35	85	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	35	85	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	35	85	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	35	85	2	52	Protein PHOSPHATE STARVATION RESPONSE 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15413	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-47	G2-like family protein