PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00002063_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 119aa MW: 14032 Da PI: 6.5145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00002063_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.1e-05	32	48	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 y+Cp+Cgk+++ + L+ FANhyb_icon00002063_a.1.g00001.1 32 YVCPNCGKRYNALDALQ 48 9**********999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00531	0.0011	1	80	IPR002853	Transcription initiation factor IIE subunit alpha, N-terminal
SuperFamily	SSF57783	1.36E-10	18	73	No hit	No description
Gene3D	G3DSA:3.30.40.10	1.4E-21	18	77	IPR013083	Zinc finger, RING/FYVE/PHD-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006367	Biological Process	transcription initiation from RNA polymerase II promoter

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MFQIYDVVRY RLHRMRKKLK DELEDKNTVQ EYVCPNCGKR YNALDALQLL SLEDEYFHCE 60 SCNGELVAES DKLASQEVGD GDSNARRQRR EKLRDMLQNM EFRIDLLKLV QGFLKGPLT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299240.1	3e-65	PREDICTED: general transcription factor IIE subunit 1-like
TrEMBL	A0A2P6P3F9	2e-62	A0A2P6P3F9_ROSCH; Putative transcription initiation factor IIE subunit alpha, TFIIEalpha/SarR/Rpc3 HTH
STRING	XP_004299240.1	1e-64	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2430	8	11