PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00002198_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25696.7 Da    PI: 8.301
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00002198_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.31.3e-201962245
                                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                      +i n sn qvtfskR +g++KKA+EL++LC++e+a+++fs++ k
  FANhyb_icon00002198_a.1.g00001.1 19 KIPNRSNLQVTFSKRCAGLFKKASELCTLCGVEIAIVVFSPSHK 62
                                      588*************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-281069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.1331070IPR002100Transcription factor, MADS-box
CDDcd002651.13E-321185No hitNo description
SuperFamilySSF554553.01E-251193IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-161232IPR002100Transcription factor, MADS-box
PfamPF003199.3E-241966IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-163247IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-164768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEMQIKKPRQ GRQKIAITKI PNRSNLQVTF SKRCAGLFKK ASELCTLCGV EIAIVVFSPS  60
HKPFSFGHPS VKALIGRFFT PSPSSFPITT HQTLYPKKAS VEHELNMQLI ATEGRLEAEK  120
RQGEDLDKMN VEGCNGGAQK NVTEQVSDCW WEKPIEELGL DELQMLKAAM EELKKNVTEQ  180
VHKMNGPAIF SVPFSVMNLD HHLSERKFAE INGCHGSMIP PCAYGHGSFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305275.11e-146PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2P6RX989e-98A0A2P6RX98_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004305275.11e-145(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-45AGAMOUS-like 61